J3_6RBD_013

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAUAAAAAAUCAAUGU*ACUCUUUG*CAU

Length

28 nucleotides

Bulged bases

6RBD|1|2|A|217, 6RBD|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|A|213
6RBD|1|2|G|214
6RBD|1|2|A|215
6RBD|1|2|U|216
6RBD|1|2|A|217
6RBD|1|2|A|218
6RBD|1|2|A|219
6RBD|1|2|A|220
6RBD|1|2|A|221
6RBD|1|2|A|222
6RBD|1|2|U|223
6RBD|1|2|C|224
6RBD|1|2|A|225
6RBD|1|2|A|226
6RBD|1|2|U|227
6RBD|1|2|G|228
6RBD|1|2|U|229
*
6RBD|1|2|A|236
6RBD|1|2|C|237
6RBD|1|2|U|238
6RBD|1|2|C|239
6RBD|1|2|U|240
6RBD|1|2|U|241
6RBD|1|2|U|242
6RBD|1|2|G|243
*
6RBD|1|2|C|250
6RBD|1|2|A|251
6RBD|1|2|U|252

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A