J3_6RBD_015

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCCGUUCUUAG*CGAGAC*GCAAUAACAGGU

Length

29 nucleotides

Bulged bases

6RBD|1|2|U|1283, 6RBD|1|2|U|1285, 6RBD|1|2|A|1287, 6RBD|1|2|A|1427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|G|1278
6RBD|1|2|C|1279
6RBD|1|2|C|1280
6RBD|1|2|G|1281
6RBD|1|2|U|1282
6RBD|1|2|U|1283
6RBD|1|2|C|1284
6RBD|1|2|U|1285
6RBD|1|2|U|1286
6RBD|1|2|A|1287
6RBD|1|2|G|1288
*
6RBD|1|2|C|1327
6RBD|1|2|G|1328
6RBD|1|2|A|1329
6RBD|1|2|G|1330
6RBD|1|2|A|1331
6RBD|1|2|C|1332
*
6RBD|1|2|G|1419
6RBD|1|2|C|1420
6RBD|1|2|A|1421
6RBD|1|2|A|1422
6RBD|1|2|U|1423
6RBD|1|2|A|1424
6RBD|1|2|A|1425
6RBD|1|2|C|1426
6RBD|1|2|A|1427
6RBD|1|2|G|1428
6RBD|1|2|G|1429
6RBD|1|2|U|1430

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29-A

Chain k

Ribosome biogenesis protein TSR1