J3_6RBD_018
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CCGUUCUUAG*CGAGAC*GCAAUAACAGG
- Length
- 27 nucleotides
- Bulged bases
- 6RBD|1|2|U|1283, 6RBD|1|2|U|1285, 6RBD|1|2|A|1287, 6RBD|1|2|A|1427
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RBD|1|2|C|1279
6RBD|1|2|C|1280
6RBD|1|2|G|1281
6RBD|1|2|U|1282
6RBD|1|2|U|1283
6RBD|1|2|C|1284
6RBD|1|2|U|1285
6RBD|1|2|U|1286
6RBD|1|2|A|1287
6RBD|1|2|G|1288
*
6RBD|1|2|C|1327
6RBD|1|2|G|1328
6RBD|1|2|A|1329
6RBD|1|2|G|1330
6RBD|1|2|A|1331
6RBD|1|2|C|1332
*
6RBD|1|2|G|1419
6RBD|1|2|C|1420
6RBD|1|2|A|1421
6RBD|1|2|A|1422
6RBD|1|2|U|1423
6RBD|1|2|A|1424
6RBD|1|2|A|1425
6RBD|1|2|C|1426
6RBD|1|2|A|1427
6RBD|1|2|G|1428
6RBD|1|2|G|1429
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain Q
- 40S ribosomal protein S16-A
- Chain R
- 40S ribosomal protein S17-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
- Chain k
- Ribosome biogenesis protein TSR1
Coloring options: