J3_6RI5_026

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

6RI5|1|A|A|3172, 6RI5|1|A|G|3173, 6RI5|1|A|A|3174, 6RI5|1|A|U|3175, 6RI5|1|A|A|3218, 6RI5|1|A|A|3268, 6RI5|1|A|U|3270, 6RI5|1|A|C|3272, 6RI5|1|A|U|3277, 6RI5|1|A|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RI5_026 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.2635

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6RI5|1|A|U|3171
6RI5|1|A|A|3172
6RI5|1|A|G|3173
6RI5|1|A|A|3174
6RI5|1|A|U|3175
6RI5|1|A|G|3176
*
6RI5|1|A|C|3212
6RI5|1|A|A|3213
6RI5|1|A|U|3214
6RI5|1|A|A|3215
6RI5|1|A|G|3216
6RI5|1|A|C|3217
6RI5|1|A|A|3218
6RI5|1|A|G|3219
6RI5|1|A|G|3220
*
6RI5|1|A|C|3265
6RI5|1|A|G|3266
6RI5|1|A|A|3267
6RI5|1|A|A|3268
6RI5|1|A|U|3269
6RI5|1|A|U|3270
6RI5|1|A|G|3271
6RI5|1|A|C|3272
6RI5|1|A|A|3273
6RI5|1|A|A|3274
6RI5|1|A|U|3275
6RI5|1|A|G|3276
6RI5|1|A|U|3277
6RI5|1|A|C|3278
6RI5|1|A|A|3279

Current chains

Chain A

25S RNA

Nearby chains

Chain G

60S ribosomal protein L6-A

Chain J

60S ribosomal protein L16-B

Chain M

60S ribosomal protein L14-A

Chain f

60S ribosomal protein L33-A