J3_6RXU_006

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGA*UAAUA*UAA

Length

12 nucleotides

Bulged bases

6RXU|1|C1|U|1449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RXU|1|C1|U|1216
6RXU|1|C1|U|1217
6RXU|1|C1|G|1218
6RXU|1|C1|A|1219
*
6RXU|1|C1|U|1446
6RXU|1|C1|A|1447
6RXU|1|C1|A|1448
6RXU|1|C1|U|1449
6RXU|1|C1|A|1450
*
6RXU|1|C1|U|1550
6RXU|1|C1|A|1551
6RXU|1|C1|A|1552

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CU

Faf1

Chain Ce

40S ribosomal protein S7

Chain Ch

40S ribosomal protein S13-like protein

Chain Cm

40S ribosomal protein S22-like protein