J3_6RZZ_015

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RZZ_015 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1608

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6RZZ|1|A|C|3298
6RZZ|1|A|A|3299
6RZZ|1|A|U|3300
*
6RZZ|1|A|A|3314
6RZZ|1|A|G|3315
6RZZ|1|A|A|3316
6RZZ|1|A|U|3317
6RZZ|1|A|G|3318
*
6RZZ|1|A|C|3388
6RZZ|1|A|U|3389
6RZZ|1|A|G|3390

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain U

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A