J3_6RZZ_017

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUGGAGA*UCGAAG

Length

28 nucleotides

Bulged bases

6RZZ|1|A|U|117, 6RZZ|1|A|G|120, 6RZZ|1|A|A|121, 6RZZ|1|A|G|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RZZ|1|A|C|113
6RZZ|1|A|A|114
6RZZ|1|A|A|115
6RZZ|1|A|A|116
6RZZ|1|A|U|117
6RZZ|1|A|U|118
6RZZ|1|A|U|119
6RZZ|1|A|G|120
6RZZ|1|A|A|121
6RZZ|1|A|A|122
6RZZ|1|A|A|123
*
6RZZ|1|A|U|149
6RZZ|1|A|A|150
6RZZ|1|A|A|151
6RZZ|1|A|U|152
6RZZ|1|A|U|153
6RZZ|1|A|U|154
6RZZ|1|A|G|155
6RZZ|1|A|G|156
6RZZ|1|A|A|157
6RZZ|1|A|G|158
6RZZ|1|A|A|159
*
6RZZ|1|A|U|262
6RZZ|1|A|C|263
6RZZ|1|A|G|264
6RZZ|1|A|A|265
6RZZ|1|A|A|266
6RZZ|1|A|G|267

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L8-A

Chain K

60S ribosomal protein L13-A

Chain O

60S ribosomal protein L15-A

Chain Z

60S ribosomal protein L35-A

Chain h

60S ribosomal protein L36-A