J3_6S0K_003

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6S0K|1|A|U|686, 6S0K|1|A|A|792, 6S0K|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S0K_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0861

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6S0K|1|A|U|683
6S0K|1|A|G|684
6S0K|1|A|A|685
6S0K|1|A|U|686
6S0K|1|A|C|687
6S0K|1|A|U|688
6S0K|1|A|A|689
*
6S0K|1|A|U|773
6S0K|1|A|G|774
6S0K|1|A|G|775
*
6S0K|1|A|C|791
6S0K|1|A|A|792
6S0K|1|A|A|793
6S0K|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34