3D structure

PDB id
6S0K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome nascent chain in complex with SecA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6S0K|1|A|U|2334, 6S0K|1|A|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S0K_019 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1061
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

6S0K|1|A|C|2295
6S0K|1|A|U|2296
6S0K|1|A|A|2297
6S0K|1|A|A|2298
6S0K|1|A|U|2299
*
6S0K|1|A|A|2317
6S0K|1|A|G|2318
6S0K|1|A|G|2319
6S0K|1|A|U|2320
6S0K|1|A|U|2321
6S0K|1|A|A|2322
6S0K|1|A|G|2323
*
6S0K|1|A|C|2332
6S0K|1|A|A|2333
6S0K|1|A|U|2334
6S0K|1|A|A|2335
6S0K|1|A|A|2336
6S0K|1|A|G|2337

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain P
50S ribosomal protein L18
Chain X
50S ribosomal protein L27

Coloring options:


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