J3_6S0Z_003

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6S0Z|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S0Z_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2397

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6S0Z|1|A|C|272
6S0Z|1|A|A|273
6S0Z|1|A|A|274
6S0Z|1|A|A|275
6S0Z|1|A|C|276
*
6S0Z|1|A|G|295
6S0Z|1|A|G|296
6S0Z|1|A|G|297
6S0Z|1|A|U|298
6S0Z|1|A|U|299
6S0Z|1|A|G|300
6S0Z|1|A|U|301
6S0Z|1|A|A|302
*
6S0Z|1|A|U|415
6S0Z|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains