J3_6S47_007

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAC*GCUAAGGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

6S47|1|AA|A|1259, 6S47|1|AA|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|AA|G|1230
6S47|1|AA|A|1231
6S47|1|AA|C|1232
*
6S47|1|AA|G|1256
6S47|1|AA|C|1257
6S47|1|AA|U|1258
6S47|1|AA|A|1259
6S47|1|AA|A|1260
6S47|1|AA|G|1261
6S47|1|AA|G|1262
6S47|1|AA|A|1263
6S47|1|AA|G|1264
6S47|1|AA|U|1265
6S47|1|AA|G|1266
*
6S47|1|AA|C|1275
6S47|1|AA|U|1276
6S47|1|AA|C|1277
6S47|1|AA|A|1278
6S47|1|AA|C|1279

Current chains

Chain AA

28S ribosomal RNA

Nearby chains