J3_6S47_015

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_015 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1406

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6S47|1|AA|C|3298
6S47|1|AA|A|3299
6S47|1|AA|U|3300
*
6S47|1|AA|A|3314
6S47|1|AA|G|3315
6S47|1|AA|A|3316
6S47|1|AA|U|3317
6S47|1|AA|G|3318
*
6S47|1|AA|C|3388
6S47|1|AA|U|3389
6S47|1|AA|G|3390

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AR

60S ribosomal protein L17-A

Chain Af

60S ribosomal protein L31-A