J3_6S47_020
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6S47|1|BA|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_020 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0739
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|BA|A|881
6S47|1|BA|U|882
6S47|1|BA|C|883
6S47|1|BA|A|884
*
6S47|1|BA|U|928
6S47|1|BA|A|929
6S47|1|BA|A|930
6S47|1|BA|C|931
6S47|1|BA|U|932
6S47|1|BA|A|933
6S47|1|BA|C|934
6S47|1|BA|U|935
6S47|1|BA|G|936
*
6S47|1|BA|C|943
6S47|1|BA|A|944
6S47|1|BA|U|945
6S47|1|BA|U|946
6S47|1|BA|U|947
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain Ar
- 60S ribosomal protein L43-A
- Chain BC
- 40S ribosomal protein S1-A
- Chain BO
- 40S ribosomal protein S13
- Chain BP
- 40S ribosomal protein S14-A
- Chain Bb
- 40S ribosomal protein S26-B
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