J3_6S47_024
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6S47|1|BA|G|1199, 6S47|1|BA|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_024 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0627
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6S47|1|BA|C|1180
6S47|1|BA|U|1181
6S47|1|BA|U|1182
6S47|1|BA|A|1183
6S47|1|BA|A|1184
6S47|1|BA|U|1185
6S47|1|BA|U|1186
6S47|1|BA|U|1187
*
6S47|1|BA|G|1198
6S47|1|BA|G|1199
6S47|1|BA|G|1200
6S47|1|BA|G|1201
6S47|1|BA|A|1202
6S47|1|BA|A|1203
6S47|1|BA|A|1204
6S47|1|BA|C|1205
6S47|1|BA|U|1206
6S47|1|BA|C|1207
6S47|1|BA|A|1208
6S47|1|BA|C|1209
*
6S47|1|BA|G|1454
6S47|1|BA|G|1455
6S47|1|BA|C|1456
6S47|1|BA|C|1457
6S47|1|BA|G|1458
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BQ
- 40S ribosomal protein S15
- Chain BT
- 40S ribosomal protein S18-A
- Chain BV
- 40S ribosomal protein S20
- Chain Be
- 40S ribosomal protein S29-A
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