J3_6S47_036

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGCUG*CACGUUCUAGCAUUCAAG*UGAU

Length

27 nucleotides

Bulged bases

6S47|1|AA|G|2549, 6S47|1|AA|U|2550, 6S47|1|AA|U|2551, 6S47|1|AA|C|2552, 6S47|1|AA|U|2553, 6S47|1|AA|A|2554, 6S47|1|AA|U|2558, 6S47|1|AA|U|2559, 6S47|1|AA|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|AA|A|2529
6S47|1|AA|G|2530
6S47|1|AA|C|2531
6S47|1|AA|U|2532
6S47|1|AA|G|2533
*
6S47|1|AA|C|2546
6S47|1|AA|A|2547
6S47|1|AA|C|2548
6S47|1|AA|G|2549
6S47|1|AA|U|2550
6S47|1|AA|U|2551
6S47|1|AA|C|2552
6S47|1|AA|U|2553
6S47|1|AA|A|2554
6S47|1|AA|G|2555
6S47|1|AA|C|2556
6S47|1|AA|A|2557
6S47|1|AA|U|2558
6S47|1|AA|U|2559
6S47|1|AA|C|2560
6S47|1|AA|A|2561
6S47|1|AA|A|2562
6S47|1|AA|G|2563
*
6S47|1|AA|U|2578
6S47|1|AA|G|2579
6S47|1|AA|A|2580
6S47|1|AA|U|2581

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain AJ

60S ribosomal protein L8-A

Chain AZ

60S ribosomal protein L25

Chain Ab

60S ribosomal protein L27-A

Chain Ae

60S ribosomal protein L30

Chain Ai

60S ribosomal protein L34-A

Chain Ar

60S ribosomal protein L43-A

Chain BC

40S ribosomal protein S1-A