J3_6S47_038
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6S47|1|AA|A|3172, 6S47|1|AA|G|3173, 6S47|1|AA|A|3215, 6S47|1|AA|G|3216, 6S47|1|AA|G|3219, 6S47|1|AA|A|3268, 6S47|1|AA|U|3270, 6S47|1|AA|C|3272, 6S47|1|AA|U|3275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_038 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1836
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6S47|1|AA|U|3171
6S47|1|AA|A|3172
6S47|1|AA|G|3173
6S47|1|AA|A|3174
6S47|1|AA|U|3175
6S47|1|AA|G|3176
*
6S47|1|AA|C|3212
6S47|1|AA|A|3213
6S47|1|AA|U|3214
6S47|1|AA|A|3215
6S47|1|AA|G|3216
6S47|1|AA|C|3217
6S47|1|AA|A|3218
6S47|1|AA|G|3219
6S47|1|AA|G|3220
*
6S47|1|AA|C|3265
6S47|1|AA|G|3266
6S47|1|AA|A|3267
6S47|1|AA|A|3268
6S47|1|AA|U|3269
6S47|1|AA|U|3270
6S47|1|AA|G|3271
6S47|1|AA|C|3272
6S47|1|AA|A|3273
6S47|1|AA|A|3274
6S47|1|AA|U|3275
6S47|1|AA|G|3276
6S47|1|AA|U|3277
6S47|1|AA|C|3278
6S47|1|AA|A|3279
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L6-A
- Chain AO
- 60S ribosomal protein L14-A
- Chain AQ
- 60S ribosomal protein L16-A
- Chain AR
- 60S ribosomal protein L17-A
- Chain Ah
- 60S ribosomal protein L33-A
Coloring options: