J3_6S47_041

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6S47|1|BA|U|238, 6S47|1|BA|C|239, 6S47|1|BA|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|BA|A|213
6S47|1|BA|G|214
6S47|1|BA|A|215
6S47|1|BA|U|216
6S47|1|BA|A|217
6S47|1|BA|A|218
6S47|1|BA|A|219
6S47|1|BA|A|220
6S47|1|BA|A|221
6S47|1|BA|A|222
6S47|1|BA|U|223
6S47|1|BA|C|224
6S47|1|BA|A|225
6S47|1|BA|A|226
6S47|1|BA|U|227
6S47|1|BA|G|228
*
6S47|1|BA|C|237
6S47|1|BA|U|238
6S47|1|BA|C|239
6S47|1|BA|U|240
6S47|1|BA|U|241
6S47|1|BA|U|242
6S47|1|BA|G|243
*
6S47|1|BA|C|250
6S47|1|BA|A|251
6S47|1|BA|U|252

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BF

40S ribosomal protein S4-A

Chain BH

40S ribosomal protein S6-A

Chain BJ

40S ribosomal protein S8-A

Chain BM

40S ribosomal protein S11-A