3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
6S47|1|BA|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S47_042 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.0873
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6S47|1|BA|U|633
6S47|1|BA|G|634
6S47|1|BA|A|635
*
6S47|1|BA|U|861
6S47|1|BA|A|862
6S47|1|BA|A|863
6S47|1|BA|U|864
6S47|1|BA|A|865
6S47|1|BA|G|866
*
6S47|1|BA|C|962
6S47|1|BA|A|963
6S47|1|BA|U|964
6S47|1|BA|U|965
6S47|1|BA|A|966

Current chains

Chain BA
18S rRNA (1707-MER)

Nearby chains

Chain BI
40S ribosomal protein S7-A
Chain BM
40S ribosomal protein S11-A
Chain BO
40S ribosomal protein S13
Chain BX
40S ribosomal protein S22-A
Chain BY
40S ribosomal protein S23-A
Chain Bc
40S ribosomal protein S27-A

Coloring options:


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