J3_6S47_042
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6S47|1|BA|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_042 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.0873
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6S47|1|BA|U|633
6S47|1|BA|G|634
6S47|1|BA|A|635
*
6S47|1|BA|U|861
6S47|1|BA|A|862
6S47|1|BA|A|863
6S47|1|BA|U|864
6S47|1|BA|A|865
6S47|1|BA|G|866
*
6S47|1|BA|C|962
6S47|1|BA|A|963
6S47|1|BA|U|964
6S47|1|BA|U|965
6S47|1|BA|A|966
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BI
- 40S ribosomal protein S7-A
- Chain BM
- 40S ribosomal protein S11-A
- Chain BO
- 40S ribosomal protein S13
- Chain BX
- 40S ribosomal protein S22-A
- Chain BY
- 40S ribosomal protein S23-A
- Chain Bc
- 40S ribosomal protein S27-A
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