Loop J3_6SGA

3D structure

PDB id: 6SGA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Body domain of the mt-SSU assemblosome from Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: UGAAAGAAUAAAAUUU*GAUUGUUUUG*CUAUUAGUUGUUUU*GCUAUUA*G
Length: 48 nucleotides
Bulged bases: 6SGA|1|CA|G|74, 6SGA|1|CA|U|138, 6SGA|1|CA|U|152, 6SGA|1|CA|U|138, 6SGA|1|CA|U|139, 6SGA|1|CA|U|152
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SGA|1|CA|U|66
6SGA|1|CA|G|74
6SGA|1|CA|A|75
6SGA|1|CA|A|76
6SGA|1|CA|A|77
6SGA|1|CA|G|78
6SGA|1|CA|A|79
6SGA|1|CA|A|88
6SGA|1|CA|U|89
6SGA|1|CA|A|90
6SGA|1|CA|A|91
6SGA|1|CA|A|92
6SGA|1|CA|A|93
6SGA|1|CA|U|94
6SGA|1|CA|U|95
6SGA|1|CA|U|96
*
6SGA|1|CA|G|132
6SGA|1|CA|A|133
6SGA|1|CA|U|134
6SGA|1|CA|U|135
6SGA|1|CA|G|136
6SGA|1|CA|U|137
6SGA|1|CA|U|138
6SGA|1|CA|U|139
6SGA|1|CA|U|140
6SGA|1|CA|G|141
*
6SGA|1|CA|C|148
6SGA|1|CA|U|149
6SGA|1|CA|A|150
6SGA|1|CA|U|151
6SGA|1|CA|U|152
6SGA|1|CA|A|153
6SGA|1|CA|G|154
6SGA|1|CA|U|134
6SGA|1|CA|U|135
6SGA|1|CA|G|136
6SGA|1|CA|U|137
6SGA|1|CA|U|138
6SGA|1|CA|U|139
6SGA|1|CA|U|140
*
6SGA|1|CA|G|141
6SGA|1|CA|C|148
6SGA|1|CA|U|149
6SGA|1|CA|A|150
6SGA|1|CA|U|151
6SGA|1|CA|U|152
6SGA|1|CA|A|153
*
6SGA|1|CA|G|154

Current chains

Chain CA: 9S rRNA

Nearby chains

Chain CO: uS15m
Chain CP: bS16m
Chain CQ: uS17m
Chain Cd: mS26
Chain Cj: mS34
Chain DD: mS51 (KRIPP1)
Chain DR: mS65
Chain DU: mS68
Chain F1: mt-SAF1 (RSM22)
Chain F3: mt-SAF3
Chain F7: mt-SAF7 (KRIPP10)
Chain F8: mt-SAF8
Chain FO: mt-SAF22 (KRIPP17)

J3_6SGA_001