J3_6SGB_001
3D structure
- PDB id
- 6SGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assemblosome of Trypanosoma brucei
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAAGAAUAAAAUUU*GAUUGUUUUG*CUAUUAGUUGUUUU*GCUAUUA*G
- Length
- 48 nucleotides
- Bulged bases
- 6SGB|1|CA|G|74, 6SGB|1|CA|U|138, 6SGB|1|CA|U|152, 6SGB|1|CA|U|138, 6SGB|1|CA|U|139, 6SGB|1|CA|U|152
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGB|1|CA|U|66
6SGB|1|CA|G|74
6SGB|1|CA|A|75
6SGB|1|CA|A|76
6SGB|1|CA|A|77
6SGB|1|CA|G|78
6SGB|1|CA|A|79
6SGB|1|CA|A|88
6SGB|1|CA|U|89
6SGB|1|CA|A|90
6SGB|1|CA|A|91
6SGB|1|CA|A|92
6SGB|1|CA|A|93
6SGB|1|CA|U|94
6SGB|1|CA|U|95
6SGB|1|CA|U|96
*
6SGB|1|CA|G|132
6SGB|1|CA|A|133
6SGB|1|CA|U|134
6SGB|1|CA|U|135
6SGB|1|CA|G|136
6SGB|1|CA|U|137
6SGB|1|CA|U|138
6SGB|1|CA|U|139
6SGB|1|CA|U|140
6SGB|1|CA|G|141
*
6SGB|1|CA|C|148
6SGB|1|CA|U|149
6SGB|1|CA|A|150
6SGB|1|CA|U|151
6SGB|1|CA|U|152
6SGB|1|CA|A|153
6SGB|1|CA|G|154
6SGB|1|CA|U|134
6SGB|1|CA|U|135
6SGB|1|CA|G|136
6SGB|1|CA|U|137
6SGB|1|CA|U|138
6SGB|1|CA|U|139
6SGB|1|CA|U|140
*
6SGB|1|CA|G|141
6SGB|1|CA|C|148
6SGB|1|CA|U|149
6SGB|1|CA|A|150
6SGB|1|CA|U|151
6SGB|1|CA|U|152
6SGB|1|CA|A|153
*
6SGB|1|CA|G|154
Current chains
- Chain CA
- 9S rRNA
Nearby chains
- Chain CO
- uS15m
- Chain CP
- bS16m
- Chain CQ
- uS17m
- Chain Cd
- mS26
- Chain Cj
- mS34
- Chain DD
- mS51 (KRIPP1)
- Chain DR
- mS65
- Chain DU
- mS68
- Chain F1
- mt-SAF1 (RSM22)
- Chain F3
- mt-SAF3
- Chain F7
- mt-SAF7 (KRIPP10)
- Chain F8
- mt-SAF8
- Chain FO
- mt-SAF22 (KRIPP17)
Coloring options: