J3_6SGB_002
3D structure
- PDB id
- 6SGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assemblosome of Trypanosoma brucei
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAUUUUU*AUUAAAUUAAUCUAUUAGUCAGAAAUG*CUAUGCUUUUAA
- Length
- 47 nucleotides
- Bulged bases
- 6SGB|1|CA|A|207, 6SGB|1|CA|U|208, 6SGB|1|CA|U|209, 6SGB|1|CA|A|210, 6SGB|1|CA|A|211, 6SGB|1|CA|U|212, 6SGB|1|CA|C|213, 6SGB|1|CA|U|214, 6SGB|1|CA|A|215, 6SGB|1|CA|U|216, 6SGB|1|CA|U|217, 6SGB|1|CA|A|218, 6SGB|1|CA|G|219, 6SGB|1|CA|U|220, 6SGB|1|CA|C|221, 6SGB|1|CA|A|222, 6SGB|1|CA|G|223, 6SGB|1|CA|A|224, 6SGB|1|CA|A|225, 6SGB|1|CA|A|226, 6SGB|1|CA|U|227, 6SGB|1|CA|U|253, 6SGB|1|CA|A|254, 6SGB|1|CA|U|255, 6SGB|1|CA|G|256, 6SGB|1|CA|C|257, 6SGB|1|CA|U|258, 6SGB|1|CA|U|259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGB|1|CA|U|31
6SGB|1|CA|A|32
6SGB|1|CA|A|33
6SGB|1|CA|U|34
6SGB|1|CA|U|35
6SGB|1|CA|U|36
6SGB|1|CA|U|37
6SGB|1|CA|U|38
*
6SGB|1|CA|A|202
6SGB|1|CA|U|203
6SGB|1|CA|U|204
6SGB|1|CA|A|205
6SGB|1|CA|A|206
6SGB|1|CA|A|207
6SGB|1|CA|U|208
6SGB|1|CA|U|209
6SGB|1|CA|A|210
6SGB|1|CA|A|211
6SGB|1|CA|U|212
6SGB|1|CA|C|213
6SGB|1|CA|U|214
6SGB|1|CA|A|215
6SGB|1|CA|U|216
6SGB|1|CA|U|217
6SGB|1|CA|A|218
6SGB|1|CA|G|219
6SGB|1|CA|U|220
6SGB|1|CA|C|221
6SGB|1|CA|A|222
6SGB|1|CA|G|223
6SGB|1|CA|A|224
6SGB|1|CA|A|225
6SGB|1|CA|A|226
6SGB|1|CA|U|227
6SGB|1|CA|G|228
*
6SGB|1|CA|C|252
6SGB|1|CA|U|253
6SGB|1|CA|A|254
6SGB|1|CA|U|255
6SGB|1|CA|G|256
6SGB|1|CA|C|257
6SGB|1|CA|U|258
6SGB|1|CA|U|259
6SGB|1|CA|U|260
6SGB|1|CA|U|261
6SGB|1|CA|A|262
6SGB|1|CA|A|263
Current chains
- Chain CA
- 9S rRNA
Nearby chains
- Chain CE
- uS5m
- Chain CP
- bS16m
- Chain CQ
- uS17m
- Chain Cp
- mS41
- Chain DD
- mS51 (KRIPP1)
- Chain F1
- mt-SAF1 (RSM22)
- Chain F4
- mt-SAF4
- Chain F8
- mt-SAF8
- Chain FB
- mt-SAF11
- Chain FE
- mt-SAF13
- Chain FM
- mt-SAF21
- Chain FN
- mt-SAF21
- Chain FW
- mt-SAF26
Coloring options: