J3_6SKG_003

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GG*CGCCAGU(OMG)G*CGC

Length

14 nucleotides

Bulged bases

6SKG|1|Aa|U|669

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|618
6SKG|1|Aa|G|619
*
6SKG|1|Aa|C|663
6SKG|1|Aa|G|664
6SKG|1|Aa|C|665
6SKG|1|Aa|C|666
6SKG|1|Aa|A|667
6SKG|1|Aa|G|668
6SKG|1|Aa|U|669
6SKG|1|Aa|OMG|670
6SKG|1|Aa|G|671
*
6SKG|1|Aa|C|678
6SKG|1|Aa|G|679
6SKG|1|Aa|C|680

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S3Ae

Chain An

30S ribosomal protein S11

Chain Aq

30S ribosomal protein S15

Chain Bg

50S ribosomal protein L37Ae