J3_6SKG_008

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAC*GCGUC*GUAA

Length

12 nucleotides

Bulged bases

6SKG|1|Aa|A|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|U|1017
6SKG|1|Aa|A|1018
6SKG|1|Aa|C|1019
*
6SKG|1|Aa|G|1026
6SKG|1|Aa|C|1027
6SKG|1|Aa|G|1028
6SKG|1|Aa|U|1029
6SKG|1|Aa|C|1030
*
6SKG|1|Aa|G|1043
6SKG|1|Aa|U|1044
6SKG|1|Aa|A|1045
6SKG|1|Aa|A|1046

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ag

30S ribosomal protein S5