J3_6SKG_010

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

6SKG|1|Aa|U|1192, 6SKG|1|Aa|U|1254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|1189
6SKG|1|Aa|A|1190
6SKG|1|Aa|A|1191
6SKG|1|Aa|U|1192
6SKG|1|Aa|G|1193
*
6SKG|1|Aa|C|1248
6SKG|1|Aa|U|1249
6SKG|1|Aa|C|1250
6SKG|1|Aa|A|1251
6SKG|1|Aa|G|1252
6SKG|1|Aa|U|1253
6SKG|1|Aa|U|1254
6SKG|1|Aa|C|1255
*
6SKG|1|Aa|G|1286
6SKG|1|Aa|C|1287
6SKG|1|Aa|U|1288
6SKG|1|Aa|G|1289

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Ap

30S ribosomal protein S13

Chain Av

30S ribosomal protein S19e