J3_6SKG_011
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GG*CUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKG_011 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.104
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
6SKG|1|BA|G|39
6SKG|1|BA|G|40
*
6SKG|1|BA|C|513
6SKG|1|BA|U|514
6SKG|1|BA|G|515
6SKG|1|BA|A|516
6SKG|1|BA|A|517
6SKG|1|BA|A|518
6SKG|1|BA|A|519
6SKG|1|BA|G|520
*
6SKG|1|BA|C|546
6SKG|1|BA|C|547
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BV
- 50S ribosomal protein L22
- Chain BX
- 50S ribosomal protein L24
- Chain Bi
- 50S ribosomal protein L39e
Coloring options: