J3_6SKG_012

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMG)(OMC)G*CGAUAAGC*GAUGCC

Length

18 nucleotides

Bulged bases

6SKG|1|BA|A|83

QA status

Modified nucleotides: OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|64
6SKG|1|BA|OMG|65
6SKG|1|BA|OMC|66
6SKG|1|BA|G|67
*
6SKG|1|BA|C|78
6SKG|1|BA|G|79
6SKG|1|BA|A|80
6SKG|1|BA|U|81
6SKG|1|BA|A|82
6SKG|1|BA|A|83
6SKG|1|BA|G|84
6SKG|1|BA|C|85
*
6SKG|1|BA|G|118
6SKG|1|BA|A|119
6SKG|1|BA|U|120
6SKG|1|BA|G|121
6SKG|1|BA|C|122
6SKG|1|BA|C|123

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L23

Chain BZ

50S ribosomal protein L29

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e