J3_6SKG_017

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCCAG*CGAGAAC*G(5MU)GCC

Length

17 nucleotides

Bulged bases

6SKG|1|BA|G|1753, 6SKG|1|BA|A|1754, 6SKG|1|BA|C|1768

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|1441
6SKG|1|BA|C|1442
6SKG|1|BA|C|1443
6SKG|1|BA|A|1444
6SKG|1|BA|G|1445
*
6SKG|1|BA|C|1750
6SKG|1|BA|G|1751
6SKG|1|BA|A|1752
6SKG|1|BA|G|1753
6SKG|1|BA|A|1754
6SKG|1|BA|A|1755
6SKG|1|BA|C|1756
*
6SKG|1|BA|G|1765
6SKG|1|BA|5MU|1766
6SKG|1|BA|G|1767
6SKG|1|BA|C|1768
6SKG|1|BA|C|1769

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Be

50S ribosomal protein L34e

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e