J3_6SKG_018

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUG*CAAGC*GAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|1553
6SKG|1|BA|G|1554
6SKG|1|BA|U|1555
6SKG|1|BA|G|1556
*
6SKG|1|BA|C|1565
6SKG|1|BA|A|1566
6SKG|1|BA|A|1567
6SKG|1|BA|G|1568
6SKG|1|BA|C|1569
*
6SKG|1|BA|G|1728
6SKG|1|BA|A|1729
6SKG|1|BA|A|1730
6SKG|1|BA|C|1731

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L14e

Chain Be

50S ribosomal protein L34e