J3_6SKG_024

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCAUAG*CGUU*AACG

Length

14 nucleotides

Bulged bases

6SKG|1|BB|U|14, 6SKG|1|BB|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BB|C|11
6SKG|1|BB|C|12
6SKG|1|BB|A|13
6SKG|1|BB|U|14
6SKG|1|BB|A|15
6SKG|1|BB|G|16
*
6SKG|1|BB|C|68
6SKG|1|BB|G|69
6SKG|1|BB|U|70
6SKG|1|BB|U|71
*
6SKG|1|BB|A|112
6SKG|1|BB|A|113
6SKG|1|BB|C|114
6SKG|1|BB|G|115

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BQ

50S ribosomal protein L18

Chain BU

50S ribosomal protein L21e