J3_6SKG_026

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGACUAAG*CG(5MC)GA(A2M)ACC*(OMG)GG

Length

20 nucleotides

Bulged bases

6SKG|1|Aa|A|47

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|41
6SKG|1|Aa|G|42
6SKG|1|Aa|A|43
6SKG|1|Aa|C|44
6SKG|1|Aa|U|45
6SKG|1|Aa|A|46
6SKG|1|Aa|A|47
6SKG|1|Aa|G|48
*
6SKG|1|Aa|C|347
6SKG|1|Aa|G|348
6SKG|1|Aa|5MC|349
6SKG|1|Aa|G|350
6SKG|1|Aa|A|351
6SKG|1|Aa|A2M|352
6SKG|1|Aa|A|353
6SKG|1|Aa|C|354
6SKG|1|Aa|C|355
*
6SKG|1|Aa|OMG|381
6SKG|1|Aa|G|382
6SKG|1|Aa|G|383

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ao

30S ribosomal protein S12