J3_6SKG_027

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(OMG)G*CUUGG*CGACG

Length

13 nucleotides

Bulged bases

6SKG|1|Aa|U|599

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|531
6SKG|1|Aa|OMG|532
6SKG|1|Aa|G|533
*
6SKG|1|Aa|C|597
6SKG|1|Aa|U|598
6SKG|1|Aa|U|599
6SKG|1|Aa|G|600
6SKG|1|Aa|G|601
*
6SKG|1|Aa|C|697
6SKG|1|Aa|G|698
6SKG|1|Aa|A|699
6SKG|1|Aa|C|700
6SKG|1|Aa|G|701

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Aj

30S ribosomal protein S8

Chain Ao

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S15

Chain As

30S ribosomal protein S17

Chain Ax

30S ribosomal protein S27e