J3_6SKG_028

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|887
6SKG|1|Aa|A|888
6SKG|1|Aa|A|889
6SKG|1|Aa|G|890
*
6SKG|1|Aa|C|1296
6SKG|1|Aa|U|1297
6SKG|1|Aa|A|1298
6SKG|1|Aa|G|1299
6SKG|1|Aa|U|1300
6SKG|1|Aa|A|1301
6SKG|1|Aa|C|1302
6SKG|1|Aa|C|1303
*
6SKG|1|Aa|G|1323
6SKG|1|Aa|C|1324
6SKG|1|Aa|G|1325
6SKG|1|Aa|A|1326
6SKG|1|Aa|A|1327
6SKG|1|Aa|U|1328
6SKG|1|Aa|A|1329
6SKG|1|Aa|C|1330
6SKG|1|Aa|G|1331

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Al

30S ribosomal protein S9

Chain Av

30S ribosomal protein S19e

Chain Ay

30S ribosomal protein S28e