J3_6SKG_029

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUUAAUU(OMG)*(OMC)GGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

6SKG|1|Aa|G|925, 6SKG|1|Aa|G|927, 6SKG|1|Aa|A|929

QA status

Modified nucleotides: OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|U|906
6SKG|1|Aa|U|907
6SKG|1|Aa|U|908
6SKG|1|Aa|A|909
6SKG|1|Aa|A|910
6SKG|1|Aa|U|911
6SKG|1|Aa|U|912
6SKG|1|Aa|OMG|913
*
6SKG|1|Aa|OMC|924
6SKG|1|Aa|G|925
6SKG|1|Aa|G|926
6SKG|1|Aa|G|927
6SKG|1|Aa|A|928
6SKG|1|Aa|A|929
6SKG|1|Aa|C|930
6SKG|1|Aa|C|931
6SKG|1|Aa|U|932
6SKG|1|Aa|C|933
6SKG|1|Aa|A|934
6SKG|1|Aa|C|935
*
6SKG|1|Aa|G|1173
6SKG|1|Aa|G|1174
6SKG|1|Aa|C|1175
6SKG|1|Aa|U|1176
6SKG|1|Aa|A|1177

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Am

30S ribosomal protein S10

Chain Ap

30S ribosomal protein S13

Chain Ar

30S ribosomal protein S14 type Z

Chain Au

30S ribosomal protein S19