J3_6SKG_030

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(5MC)GUCAG*CGAGAC*GCGACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|5MC|1007
6SKG|1|Aa|G|1008
6SKG|1|Aa|U|1009
6SKG|1|Aa|C|1010
6SKG|1|Aa|A|1011
6SKG|1|Aa|G|1012
*
6SKG|1|Aa|C|1051
6SKG|1|Aa|G|1052
6SKG|1|Aa|A|1053
6SKG|1|Aa|G|1054
6SKG|1|Aa|A|1055
6SKG|1|Aa|C|1056
*
6SKG|1|Aa|G|1140
6SKG|1|Aa|C|1141
6SKG|1|Aa|G|1142
6SKG|1|Aa|A|1143
6SKG|1|Aa|C|1144
6SKG|1|Aa|G|1145

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ac

30S ribosomal protein S3

Chain Ag

30S ribosomal protein S5

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain Ar

30S ribosomal protein S14 type Z

Chain At

30S ribosomal protein S17e