J3_6SKG_031

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGC*(OMG)GAC*GGAG

Length

11 nucleotides

Bulged bases

6SKG|1|Aa|A|1135

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|1060
6SKG|1|Aa|G|1061
6SKG|1|Aa|C|1062
*
6SKG|1|Aa|OMG|1107
6SKG|1|Aa|G|1108
6SKG|1|Aa|A|1109
6SKG|1|Aa|C|1110
*
6SKG|1|Aa|G|1133
6SKG|1|Aa|G|1134
6SKG|1|Aa|A|1135
6SKG|1|Aa|G|1136

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain At

30S ribosomal protein S17e