J3_6SKG_035
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- (OMG)(OMC)*GAUAAGC*GAUGC
- Length
- 14 nucleotides
- Bulged bases
- 6SKG|1|BA|U|81, 6SKG|1|BA|A|83
- QA status
- Modified nucleotides: OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKG_035 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0945
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKG|1|BA|OMG|65
6SKG|1|BA|OMC|66
*
6SKG|1|BA|G|79
6SKG|1|BA|A|80
6SKG|1|BA|U|81
6SKG|1|BA|A|82
6SKG|1|BA|A|83
6SKG|1|BA|G|84
6SKG|1|BA|C|85
*
6SKG|1|BA|G|118
6SKG|1|BA|A|119
6SKG|1|BA|U|120
6SKG|1|BA|G|121
6SKG|1|BA|C|122
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BW
- 50S ribosomal protein L23
- Chain BZ
- 50S ribosomal protein L29
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bi
- 50S ribosomal protein L39e
Coloring options: