J3_6SKG_038

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_038 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0942

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6SKG|1|BA|U|1578
6SKG|1|BA|G|1579
6SKG|1|BA|A|1580
6SKG|1|BA|C|1581
6SKG|1|BA|G|1582
*
6SKG|1|BA|C|1709
6SKG|1|BA|C|1710
*
6SKG|1|BA|G|1714
6SKG|1|BA|A|1715
6SKG|1|BA|A|1716
6SKG|1|BA|A|1717
6SKG|1|BA|A|1718
6SKG|1|BA|G|1719

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Be

50S ribosomal protein L34e

Chain Bg

50S ribosomal protein L37Ae