J3_6SKG_040

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGAC*GAGAG*CGAAAC

Length

16 nucleotides

Bulged bases

6SKG|1|Aa|A|1166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|941
6SKG|1|Aa|C|942
6SKG|1|Aa|G|943
6SKG|1|Aa|A|944
6SKG|1|Aa|C|945
*
6SKG|1|Aa|G|987
6SKG|1|Aa|A|988
6SKG|1|Aa|G|989
6SKG|1|Aa|A|990
6SKG|1|Aa|G|991
*
6SKG|1|Aa|C|1162
6SKG|1|Aa|G|1163
6SKG|1|Aa|A|1164
6SKG|1|Aa|A|1165
6SKG|1|Aa|A|1166
6SKG|1|Aa|C|1167

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ar

30S ribosomal protein S14 type Z