J3_6SNT_006
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 6SNT|1|1|A|1065, 6SNT|1|1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_006 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.1617
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SNT|1|1|U|986
6SNT|1|1|U|987
*
6SNT|1|1|A|1062
6SNT|1|1|G|1063
6SNT|1|1|A|1064
6SNT|1|1|A|1065
6SNT|1|1|G|1066
*
6SNT|1|1|C|1092
6SNT|1|1|A|1093
6SNT|1|1|U|1094
6SNT|1|1|U|1095
6SNT|1|1|U|1096
6SNT|1|1|G|1097
6SNT|1|1|A|1098
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ao
- 60S ribosomal protein L29
- Chain m
- 60S ribosomal protein L7-A
- Chain z
- 60S ribosomal protein L21-A
Coloring options: