J3_6SNT_013
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 6SNT|1|1|G|2549, 6SNT|1|1|U|2550, 6SNT|1|1|U|2551, 6SNT|1|1|A|2554, 6SNT|1|1|U|2558, 6SNT|1|1|U|2559, 6SNT|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.145
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SNT|1|1|A|2529
6SNT|1|1|G|2530
6SNT|1|1|C|2531
6SNT|1|1|U|2532
*
6SNT|1|1|A|2547
6SNT|1|1|C|2548
6SNT|1|1|G|2549
6SNT|1|1|U|2550
6SNT|1|1|U|2551
6SNT|1|1|C|2552
6SNT|1|1|U|2553
6SNT|1|1|A|2554
6SNT|1|1|G|2555
6SNT|1|1|C|2556
6SNT|1|1|A|2557
6SNT|1|1|U|2558
6SNT|1|1|U|2559
6SNT|1|1|C|2560
6SNT|1|1|A|2561
6SNT|1|1|A|2562
6SNT|1|1|G|2563
*
6SNT|1|1|U|2578
6SNT|1|1|G|2579
6SNT|1|1|A|2580
6SNT|1|1|U|2581
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain aa
- 60S ribosomal protein L43-A
- Chain aj
- 60S ribosomal protein L34-A
- Chain an
- 60S ribosomal protein L30
- Chain aq
- 60S ribosomal protein L27-A
- Chain as
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L2-A
- Chain n
- 60S ribosomal protein L8-A
Coloring options: