J3_6SNT_020
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6SNT|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_020 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0776
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SNT|1|2|A|881
6SNT|1|2|U|882
6SNT|1|2|C|883
6SNT|1|2|A|884
*
6SNT|1|2|U|928
6SNT|1|2|A|929
6SNT|1|2|A|930
6SNT|1|2|C|931
6SNT|1|2|U|932
6SNT|1|2|A|933
6SNT|1|2|C|934
6SNT|1|2|U|935
6SNT|1|2|G|936
*
6SNT|1|2|C|943
6SNT|1|2|A|944
6SNT|1|2|U|945
6SNT|1|2|U|946
6SNT|1|2|U|947
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S1-A
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14-A
- Chain a
- 40S ribosomal protein S26-A
- Chain aa
- 60S ribosomal protein L43-A
Coloring options: