J3_6SNT_024
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6SNT|1|2|G|1199, 6SNT|1|2|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_024 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0744
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SNT|1|2|C|1180
6SNT|1|2|U|1181
6SNT|1|2|U|1182
6SNT|1|2|A|1183
6SNT|1|2|A|1184
6SNT|1|2|U|1185
6SNT|1|2|U|1186
6SNT|1|2|U|1187
*
6SNT|1|2|G|1198
6SNT|1|2|G|1199
6SNT|1|2|G|1200
6SNT|1|2|G|1201
6SNT|1|2|A|1202
6SNT|1|2|A|1203
6SNT|1|2|A|1204
6SNT|1|2|C|1205
6SNT|1|2|U|1206
6SNT|1|2|C|1207
6SNT|1|2|A|1208
6SNT|1|2|C|1209
*
6SNT|1|2|G|1454
6SNT|1|2|G|1455
6SNT|1|2|C|1456
6SNT|1|2|C|1457
6SNT|1|2|G|1458
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
- Chain f
- Ubiquitin-40S ribosomal protein S31
Coloring options: