J3_6SNT_044
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6SNT|1|3|U|60, 6SNT|1|3|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_044 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0644
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SNT|1|3|A|44
6SNT|1|3|C|45
*
6SNT|1|3|G|58
6SNT|1|3|A|59
6SNT|1|3|U|60
6SNT|1|3|A|61
6SNT|1|3|C|62
6SNT|1|3|G|63
6SNT|1|3|U|64
*
6SNT|1|3|A|96
6SNT|1|3|A|97
6SNT|1|3|U|98
6SNT|1|3|C|99
6SNT|1|3|U|100
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain ai
- 60S ribosomal protein L35-A
- Chain as
- 60S ribosomal protein L25
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