J3_6SPB_019
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUCAG*CGCAGAG*CAAAAG
- Length
- 18 nucleotides
- Bulged bases
- 6SPB|1|A|C|2306, 6SPB|1|A|A|2321, 6SPB|1|A|A|2323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPB_019 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.4376
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6SPB|1|A|C|2282
6SPB|1|A|U|2283
6SPB|1|A|C|2284
6SPB|1|A|A|2285
6SPB|1|A|G|2286
*
6SPB|1|A|C|2304
6SPB|1|A|G|2305
6SPB|1|A|C|2306
6SPB|1|A|A|2307
6SPB|1|A|G|2308
6SPB|1|A|A|2309
6SPB|1|A|G|2310
*
6SPB|1|A|C|2319
6SPB|1|A|A|2320
6SPB|1|A|A|2321
6SPB|1|A|A|2322
6SPB|1|A|A|2323
6SPB|1|A|G|2324
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L31
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
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