J3_6SPC_005

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCCUAACAAU*AGUGGGGAAUAU*AGC

Length

25 nucleotides

Bulged bases

6SPC|1|a|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPC|1|a|G|46
6SPC|1|a|C|47
6SPC|1|a|C|48
6SPC|1|a|U|49
6SPC|1|a|A|50
6SPC|1|a|A|51
6SPC|1|a|C|52
6SPC|1|a|A|53
6SPC|1|a|A|55
6SPC|1|a|U|56
*
6SPC|1|a|A|350
6SPC|1|a|G|351
6SPC|1|a|U|352
6SPC|1|a|G|353
6SPC|1|a|G|354
6SPC|1|a|G|355
6SPC|1|a|G|356
6SPC|1|a|A|357
6SPC|1|a|A|358
6SPC|1|a|U|359
6SPC|1|a|A|360
6SPC|1|a|U|361
*
6SPC|1|a|A|387
6SPC|1|a|G|388
6SPC|1|a|C|389

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16