J3_6SPD_007

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6SPD|1|A|A|1599

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPD_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1872

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6SPD|1|A|C|1293
6SPD|1|A|A|1294
6SPD|1|A|A|1295
6SPD|1|A|G|1296
*
6SPD|1|A|C|1595
6SPD|1|A|C|1596
6SPD|1|A|C|1597
6SPD|1|A|A|1598
6SPD|1|A|A|1599
6SPD|1|A|A|1600
6SPD|1|A|C|1601
*
6SPD|1|A|G|1610
6SPD|1|A|U|1611
6SPD|1|A|G|1612

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34