J3_6SPD_011

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6SPD|1|A|A|2505, 6SPD|1|A|U|2506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPD_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1415

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|C|2504
6SPD|1|A|A|2505
6SPD|1|A|U|2506
6SPD|1|A|C|2507
*
6SPD|1|A|G|2532
6SPD|1|A|U|2533
6SPD|1|A|A|2534
*
6SPD|1|A|U|2548
6SPD|1|A|U|2549
6SPD|1|A|U|2550
6SPD|1|A|A|2551
6SPD|1|A|A|2552
6SPD|1|A|A|2553
6SPD|1|A|G|2554

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14