J3_6SPD_013

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCC*GUUGAU*AAUGC

Length

14 nucleotides

Bulged bases

6SPD|1|A|U|2819, 6SPD|1|A|A|2821, 6SPD|1|A|U|2870

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|G|2799
6SPD|1|A|C|2800
6SPD|1|A|C|2801
*
6SPD|1|A|G|2817
6SPD|1|A|U|2818
6SPD|1|A|U|2819
6SPD|1|A|G|2820
6SPD|1|A|A|2821
6SPD|1|A|U|2822
*
6SPD|1|A|A|2868
6SPD|1|A|A|2869
6SPD|1|A|U|2870
6SPD|1|A|G|2872
6SPD|1|A|C|2873

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17