J3_6SPD_014
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AUCAUAG*CG*UCAU
- Length
- 13 nucleotides
- Bulged bases
- 6SPD|1|B|U|13, 6SPD|1|B|C|107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPD_014 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3196
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SPD|1|B|A|9
6SPD|1|B|U|10
6SPD|1|B|C|11
6SPD|1|B|A|12
6SPD|1|B|U|13
6SPD|1|B|A|14
6SPD|1|B|G|15
*
6SPD|1|B|C|67
6SPD|1|B|G|68
*
6SPD|1|B|U|106
6SPD|1|B|C|107
6SPD|1|B|A|108
6SPD|1|B|U|109
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
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