J3_6SPD_018
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUA*UCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6SPD|1|A|A|2375, 6SPD|1|A|C|2409, 6SPD|1|A|C|2411, 6SPD|1|A|A|2413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPD_018 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.4448
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SPD|1|A|G|2269
6SPD|1|A|U|2270
6SPD|1|A|A|2271
*
6SPD|1|A|U|2371
6SPD|1|A|C|2372
6SPD|1|A|U|2373
6SPD|1|A|U|2374
6SPD|1|A|A|2375
6SPD|1|A|G|2376
6SPD|1|A|U|2377
6SPD|1|A|G|2378
6SPD|1|A|A|2379
6SPD|1|A|U|2380
6SPD|1|A|C|2381
6SPD|1|A|C|2382
*
6SPD|1|A|G|2408
6SPD|1|A|C|2409
6SPD|1|A|U|2410
6SPD|1|A|C|2411
6SPD|1|A|A|2412
6SPD|1|A|A|2413
6SPD|1|A|C|2414
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L33
- Chain 5
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
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